PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0411 (374 amino acids)

SeqID: PP_0411 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141512: Maltose/maltodextrin import ATP-binding protein malK]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0411
MSEAKSNAATGETLVSFRGVQKSYDGESLIVKDLNLDIRKGEFLTLLGPSGSGKTTSLMM
LAGFETPTAGEIQLGGRSINNVPPHKRDIGMVFQNYALFPHMTVAENLAFPLTVRNLSKT
DISERVKRVLNMVQLDAFAKRYPGQLSGGQQQRVALARALVFEPQLVLMDEPLGALDKQL
REHMQMEIKHIHQRLGVTVVYVTHDQGEALTMSDRVAVFHQGEIQQIADPRTLYEEPCNT
FVANFIGENNRISGTLLASDGKRCQVQLPRGERVEALAVNVGQAGEPVTLSIRPERVRLN
GHSESCVNRFSGRVAEFIYLGDHVRVRLEVCGKGDFFVKQPIAELDPALAVGDVVPLGWE
VEHARALDPIAEAH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory