PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0495 (329 amino acids)

SeqID: PP_0495 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129721: cytoplasmic L-asparaginase I [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0495
MRAVKNLLVLYTGGTIGMLETPEGLAPAGGFEARMREHFAQMANAPQVQWTLHELNPLLD
SANMQQHNWLAMRDAIVAAVDVAGHDGVLVLHGTDSMAYSAAALSFLLLDLPAPVVLTGS
MLPAGVPDSDAWDNLCGALRQFEHGLEDGVQLYFHGQLLHGCRASKLRSEAFDAFAALPR
HRDAERADTIPAELGYKQPRKPVNLAVVPVFPGLQAGHLQALIDSGVQGLLLECYGSGTG
PSDDQALLNVLSTARQRGVMLAAISQCPEGSVVFDTYAAGNRLRGAGLVSGGGMTREAAL
GKMVALLGAGLDADAADRWFVLDLCGERA