PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_0897 (507 amino acids)

SeqID: PP_0897 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599529: probable fumarase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_0897
MTVIKQDDLIQSVADALQFISYYHPVDFIQAMHEAYLREESPAARDSIAQILINSRMCAT
GHRPICQDTGIVTVFIRVGMDVRWDGATMSVDDMINEGVRRAYNLPENVLRASILADPAG
ARKNTKDNTPAVIHYSIVPGDKVEVDVAAKGGGSENKSKMAMLNPSDSIVDWVLKTVPTM
GAGWCPPGMLGIGIGGTAEKAAVMAKEVLMESIDIHELKARGPQNRLEEIRLELFDKVNQ
LGIGAQGLGGLTTVLDVKIMDYPTHAASLPVCMIPNCAATRHAHFVLDGTGPAELEAPSL
DAYPEIVWEAGPSARRVNLDDITPEEVASWKPGETILLNGKMLTGRDAAHKRMVEMLNRG
EELPVDLKGRFIYYVGPVDPVGDEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERG
PTAIEAIKDNKAVYLMAVGGAAYLVAQAIRKSKVLAFAELGMEAIYEFEVKDMPVTVAVD
SNGESVHITGPALWQSKIAESLAVEVK