PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1163 (678 amino acids)

SeqID: PP_1163 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1163
MQQSPDHRPSPWHAGEKTLQEKVGVAERMEAFGQKVIRDHMPDQHRTFYHQLPFMVAASV
DAQGRPWATLLEGPEGFVSSPDPRMLTIHTTLPADDPATPGLAAGQAVGLLGIELHTRRR
NRINGQIRHAAQGQLQVAVEQAFGNCPQYIQLRDYTRVTEPALGRIDATTLDTSTVSMIQ
AADTFFVASYVEHAYGQRSVDVSHRGGRPGFIKVEGNRLTIPDYAGNLHFNTLGNLVVNP
RAGLLFIDFKNGNVLQLYGRAEVLLDSPAIQAFEGAERLWTLQVEKVVWRPAAVALRWAF
KEYAPTSLMTGTWAEADARLEQRQQQRQWLAWRVLRVEQESRDIRSFYLEPPAGCRVAFA
PGQHLPVQVPRDGESALIRTYSLSSAPDDGFLRISVKAQGPASRYLHERVVAGDVLNVRP
PMGSFTLDQQSTRPLVLIGAGVGITPLLAMLRQQLRTGQARRIHLFHGARSLADLPFQQE
LAALRQQAGDLLQVHRALSQPEGHAQVGRDYEFAGRLGIEQVKATLALDDYDFYLCGPGS
FTQQLYEGLRGVHVPDARIHAEAFGPSTLRRHTDADQPVLQQPPAADEPVPVYFAASAKE
ARWVPGSGTLLELAEARGLAPEFSCRGGSCGTCKTRLVSGQVHYPNPPAELPEAGSVLIC
CAVPAKVEEGMQALVLDV