PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1298 (392 amino acids)

SeqID: PP_1298 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84028710: Glutamate/aspartate transport system permease protein gltJ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1298
MQNQIGAPKGLSLNDPRVRAWLFQILTIVFVVGLGWYLFHNTQTNLQHRGITSGFDFLDR
SAGFGIAQHLIPYVESDSYARVFVIGLLNTLLVTFIGVILATILGFIIGVARLSPNWMIN
KLATVYVETFRNIPPLLQILFWYFAVFLTLPGPRGSINIEDMFFISNRGLNMPGASIADG
FWPFVVALALAIAAIALMVRYANKRFNETGVPFHKFWAGLLLFIAIPSLSVLLFGSPVTW
DMPQLKGFNFVGGWVLIPELLALTLALTIYTAAFIAEIVRSGIRSVSHGQTEAARSLGLR
EGPTLRKVIIPQALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAIE
VIAITMSVYLAISISISLLMNWYNKRIALIER