PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_1949 (550 amino acids)

SeqID: PP_1949 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_1949
MSEEQPVYDYIIIGAGSAGCVLANRLSANPEHSVLLLEAGSRPKGLWASMPAGVSRVILP
GPTNWAYQSEPDPSLAGRRIYVPRGKALGGSSAINGMAYLRGHREDYDHWVSLGCAGWGW
DDVLPFYKKFEHREEGDEAFRGRDGELWVTDPVFKHPSSQAFIESCVEAGIPRLDDLNAP
SPEGTGFLQFTIKGGRRHSAATAFLQPVLKRPNLHVLTGALVQKIVIEAERATGVEYSLG
NQSIFAAAREIILSAGAIDSPKLLMLSGVGPAQELTRHGIPVLRDLPGVGENLHDHVYVH
SGIETDRVASLNKDLRGLRSVLQGMNYLLRGKGCLTMGASQAVALAQVLPGARRPDTQIN
YRPLSWHFNKQGLVEIGKDNAVTISTCQLNPLSRGRLTLKSSNPIDAPAIYPNYFGNERD
MVAAIAAVRKVREISCVGPLAKHIVNISPPDSMSDGEIADYIRQEGASSMMHWVGSCKMG
IDSMAVVDERLKVRGLQGLRVVDASIMPTITSGNTNAPTIMIGEKGAAMILEDRLIGPRR
KFRSESARAN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory