PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2055 (359 amino acids)

SeqID: PP_2055 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2055
MQRIPCVLMRGGTSKGPFFHAWDLPANVVERDELLINLMGSGHELEIDGIGGGSPQTSKV
AIISPSLHADADVDYLFVQVMVAQRRVDTAPNCGNMLCAVGPFAIEQGLVKGQEGKTLVR
IRNLNTGTFVNSLVETPGGIVRYEGRTAIDGVPGTAAPVHLTFLDAVGSKTGKLFPTGKA
QDVIDGVPVTCIDMAMPMMVVEASQLGVSGSETPAQLDANSALLERLEALRLKAGKAMGL
GDVSGMVIPKPVLVSKPRYDGTLQVRYFMPHNCHRALAITGAVGLATACVSPGTVIADLL
GEGAQQLAQVRLEHPSGGIDVALTRSGAEGQTIQASVVRTARRLFSGFVYAPTFRRLAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory