PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2112 (913 amino acids)

SeqID: PP_2112 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2112
MPSLDSLNTLKPLKVGDKTYHYFSLTEAARQLGDLQRLPMSLKVLLENLLRWEDGATVTG
DDLRAIAQWLGERRSDREIQYRPARVLMQDFTGVPAVVDLAAMRAAMAKAGGDPQRINPL
SPVDLVIDHSVMVDRYGTPQAFAENVDIEMQRNGERYAFLRWGQSAFDNFRVVPPGTGIC
HQVNLEYLGRTVWTREADGRTYAFPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPEVIGFKLTGKLREGITATDLVLTVTQMLRKKGVVGKFVEFYGDGLAELPLADR
ATIANMAPEYGATCGFFPVDQVTLDYLRLSGRPEATVQLVEQYCKAQGMWRLPGQEPSFS
DTLALDMDDVEASLAGPKRPQDRVALGQVSQAFDHFIELQPKPLAKEVGRLESEGGGGVA
VGNADQTGAVDYSHQGQTHTLRDGAVVIAAITSCTNTSNPSVMMAAGLVAKKALEKGLQR
KPWVKSSLAPGSKVVTDYFKAAGLTPYLDQLGFDLVGYGCTTCIGNSGPLDEAIEKAIGS
ADLTVASVLSGNRNFEGRVHPLVKTNWLASPPLVVAYALAGSVRLDLTRDPLGSGKDGQP
VYLRDIWPSQQEIAEAVAKVDTAMFHKEYAEVFAGDAQWQAIEVPQAATYVWQADSTYIQ
HPPFFDGIGGPPPQIANIHGARVLALLGDSVTTDHISPAGNIKTDSPAGRYLREQGVEPR
DFNSYGSRRGNHEVMMRGTFANIRIRNEMLAGEEGGNTLHVPTGEKLSIYDAAMRYQQEG
TPLLVIAGQEYGTGSSRDWAAKGTNLLGVKAVLAESFERIHRSNLVGMGVLPLQFKAGHN
RKQLGLTGKEQIDVLGLDGAHIHPGMSLPLRITREDGQQEQIEVLCRIDTLNEVEYFKAG
GILHYVLRQMIAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory