PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2479 (407 amino acids)

SeqID: PP_2479 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2493995: Diheme cytochrome c-type]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.96
    CytoplasmicMembrane    4.96
    Extracellular          0.07
    OuterMembrane          0.01
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2479
MMKLISNVLTLASAALLAQAAYAQEDLLAKGEYLTRAANCVACHTVPGGQPFAGGVEFKL
PFGSLFSPNITPDPQTGIGAWTDDEFVSALQTGIGRDGKHYYPAFPYTSYSKMSRDDILA
IKGYLDSLQPVEQAPRENHIGFPFNQRWGMVFWNLLFLNDEPFQADSQRSAEWNRGKYLV
EGPGHCGECHSPRNLFQAVSSERSLAGNLIQGWNAYNISADPVHGIGAWPTDVLAGYLKD
GAAPGLGLSSGPMAEVVENSLRHLTDADRQAIAVFLKDSPPRSEGVPRPQQVTLAEPGSG
SALGNKLFAEACASCHRWDGTGNQSQTAMLLGLKTVNDPAASNLLGILLSGHGAADAPVN
RRMPSFGNIYTDQELAALSSFMLQRFGESGAQVSVPAVAKRRTESLH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory