PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2554 (635 amino acids)

SeqID: PP_2554 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2554
MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLYYAGSPRQVRQMCADLGIAITLF
QPFRDFEGCRRDRLQKNLDRAERKFDLMQELGTDLVLVCSNVQADALGDEQLLVDDLRLL
GEHAGKRGLRIGYEALAWGRHVNTYQQVWNLVRQADHPALGVILDSFHTLSLKGDPSAIR
DIPGDKIFFVQMADAPILAMDVLEWSRHFRCFPGQGEMDMAGFLAPILATGYRGPLSLEI
FNDGFRAAPTRQNAADGLRSLLYLEEQTRLRLEQENTPIEPGVLFSPPPASAYDGVEFLE
FAVDEAVGARLGNWLKRLGFAEAGKHRSKEVQLLRQGDINIVLNAEPYSFGHNFFEAHGP
SLCATALRVKDQQAALKRATAFRGQPFRGLVGPNECEVPAVRAPDGSLLYLVEQGTAGHT
LYDTDFSLDNNATATGGLRRIDHMALALPAESLDSWVLFYKSLFDFAADDEVVLPDPYGL
VKSRALRSQCGTLRLPLNISENRNTAIAHALSSYRGSGVHHIAFDCDDIFREVARAKLAG
VPLLEIPLNYYDDLAARFDFDDEFLSELAYYNVLYDRDAQGGELFHVYTEPFEERFFFEI
IQRKAGYAGYGAANVAVRLAAMAKARSGAARKPVL