PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_2602 (350 amino acids)

SeqID: PP_2602 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 59802551: Glucose--fructose oxidoreductase precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_2602
MNAPLRIALIGAGIMGRQHYQHLRNVPQAQLCAVADPGPQAEAFAAECGVPCFADHRQML
EQVRPEAVIVANPNTLHVATALDCVEAGVPVLVEKPVGVNLDEVRALVEASRRRGVPVLV
GHHRRHNPLIAKAHQVINEGKLGRLINVTALWQLQKPDSYFETPWRREPGAGFLLTNLIH
DLDLLRYLCGEVVQVQAFTRNDVRGFANEDSAAVLLQFANGALGSLTGSDAVAAPWSWEL
DAGESPVYPRQDGQPCYLLAGTQGALSIPQLKRWHYAEAGSGWHTPLLQSSESIPAGEAL
TLQLQHFVRVARGEQAPLIDAADGGRTLALIEAIRQAAQSGRACAPAHIG