PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3001 (410 amino acids)

SeqID: PP_3001 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3001
MSQTLPLAGIRVVDYSHFLAGPYVGRCLAALGAEVIKVERPGSGDAGRQHAFTLDDQQSG
YFLQLNMGKQGVSVNMKDPRGKAFMQRLTDSADVFIENYRPGALDKLGLGYAELSARNPR
LVYCSISAYGHTGPDAHRAGFGLIAEAKSGIMQMVGVPGEAPPLLRISLGDMYTGIHAVA
AINAALLGRVSSGRGQHIDMALYDTLVSMHEYAVQCYTLSGGTVLPQQTGHDMPTSTLYG
VFRATDGDLVIAAQVDDAWQRFAAMLEANGGPPGFGSDRRYHGLNGRNAHREAILAVVRD
WVGARRVAEILALLDGIDIPSAKVQRIDEVLADPQIQARNMVIEQQHPRYGTLRLANLPF
RFSDCDTTIHQVAPDLGQHNAEVAAGLGFSPEEITALQADGVLFTHGDAR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory