PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3129 (321 amino acids)

SeqID: PP_3129 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598533: ADP-L-glycero-D-mannoheptose 6-epimerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3129
MKYLVVGGAGYIGSHMVKHLLAAGHEVLVADLVSPGPGIQWAKLDIADEAALDVLFGVCR
FDAVFHFASFIQVGESVSAPGKYYQNNVAATLSLLQAMVNAGIRHLVFSSSAAVYGNPQY
VPIDEAHTKGPINPYGLSKWMVEQILEDFDRAYGLKSVSLRYFNAAGADPEGQLGERHEP
ETHLIPLILQAASGRREAVTVFGRDYDTPDGTCIRDYVHVADLAAAHALAVDYLLDGGER
AAFNLGNGLGFSVQQVIDTARAVTGRQITALDAQRRAGDPPRLVADASKAMQVLGWRPAF
ASLEQIVRHAWQWELQYPWRR