PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3377 (430 amino acids)

SeqID: PP_3377 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 4033491: Inner membrane transport protein yfaV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3377
MQSQSLAPRRWWYIIPIVFVTYSLAYLDRANYGFAAASGMAEDLHITPVLSSLLGALFFL
GYFFFQVPGAIYAEKRSVKKLIFVCLILWGGLATLTGMVSNVYMLIGIRFLLGVVEAAVM
PAMLVYLCHWFTRAERSRANTFLMLGNPVTILWMSVVSGYLIKHYDWRWMFIIEGLPAVI
WAFFWWRLVDDRPAQVAWLSEQEKAALAQALAAEQQGIKPVKNYREAFRSPQVIILALQY
FCWSIGVYGFVLWLPSILKQAANVDIVQAGWLASVPYLAAVLAMVGVSWASDRLQKRKRF
VWPPLLIAALAFYGSYALGSEHFWLSYALLVVAGACMYAPYGPFFAIVPEILPANVAGGA
MALINSMGALGSFGGSWLVGYLNGATGGPGASYLFMCGALLTAVALTAALNTSQTSGRAK
RDSSRLAMNH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory