PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3558 (338 amino acids)

SeqID: PP_3558 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15600296: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3558
MKSISTLLAGLLLTVGLASTDSAASAEQPAPIHFGAIGWESGALTTEILRLIVERGYGYR
TDTLPGSTVSMEVALARNDLQVIAEEWAGRSPAWVKAEQAGQVFALGDTVKNAEEGWWVP
AYVIEGDAARNLKPVAPELHSVEDLKRYPQVFSDPESPGKGRFLNSPSGWTSETVNSQKL
KAYGLDGLYNNFRSGSGAAMDAEIGSAIRRGKPVLFYYWNPTPLMGRYKLIRLEEPPFDA
QAWATLTDPANPNPKGSRSLPAKLSIGVSKAFRENYPDLVSVFEQVDLPIDRLNKALAVM
SEKRTPPREAALTFLRDNREVWKAWLPADIAAKVEASL