PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3569 (805 amino acids)

SeqID: PP_3569 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3569
MKETPRASGATNFILVGLGVIIALLGLLLAAGGVKLAGLGGSWYFLIGGLAMAIAGVLIA
RRKKAGAWLYAVFLVGTAIWALIDAGLVFWPLFSRLFMFGAIGMVVALVYPLLARANGAS
AGRGAYGVAGVMAVVLVVAVGNMFVAHPSVAPTGKGPGMTPVETGKEQKDWAHYGNTEGG
SRFAALDQINRDNVNKLKVAWTYQTGDVAISDGNGAEDQLTPLQIGSKVFICTPHNNLIA
LDADTGKELWKNEINAQSKVWQRCRGMAYFDATAAIAQPTQPNSSPITGVSVAAGANCQR
RLLTNTIDGRLIAVDADTGEFCQGFGNNGQVDLKAGLGDVPDSYYQLSSAPLMAGTTVVV
GGRVADNVQTDMPGGVIRGFDVITGEMRWAFDPGNPEDRQAPQGDKTYVRSTPNSWAPMS
YDPAMNTVFLPMGSSSTDIYGVERSKLDHTYGASVLALDATTGNQKWVFQTVHNDLWDFD
LPMQPSLIDFTKDDGQSVPAVVIGTKAGQIYVLDRATGKPLTQVDEVPVKPSNIPNEPYS
PTQPKSVGMPQIGAQTLTESDMWGATPYDQLLCRIDFKKMRYDGLYTAPGTDLSLSFPGS
LGGMNWGSISTDPVHGFIFVNDMRLGLWIQMIPSQNKGGAASGGEALNTGMGAVPLKGTP
YAVNKNRFLSVAGIPCQAPPFGTLTAIDMKTRQVAWQVPVGTVEDTGPLGIRMHLPIKIG
LPTLGGTLSTQGGLVFIAGTQDFYLRAYDSSNGNEIWKARLPVGSQGGPMTYVSPKTGKQ
YVVITAGGARQSTDRGDYVISYALP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory