PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_3745 (499 amino acids)

SeqID: PP_3745 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_3745
MNILYDERVDGALPNVDLAALLQALRDALPDLEILHRDEDLKPYECDGLSAYRTVPLLVA
LPERLEQVQTLLKLCHQRGVPVVARGAGTGLSGGALPLAKGILLVMARFNRILEVNPQGR
YARVQPGVRNLAISQAAAPHGMYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNVL
KVDILTVEGERLSLGSDALDSPGFDLLALFIGSEGMLGIVTEVTVKLLPKPQVARVILAS
FDSVEDAGRAVADIIAAGIIPGGLEMMDNLAIRAAEDFIHAGYPVDAAAILLCELDGVEA
DVYDDCERVAAVLTQAGAREVHLACDEAERARFWAGRKNAFPAVGRISPDYYCMDGTIPR
RELPRVLKGISDLSAEYGLRVANVFHAGDGNMHPLILFDANLPGELERAEAIGGKILELC
VKVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPQGLLNPGKNIPTLHRCAE
FGALHVHQGQLPFPELERF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory