PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4041 (598 amino acids)

SeqID: PP_4041 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4041
MPAQIEDYALLGNCRSAALVSRDGALDWLCLPRFDAPAVFAALLGNEENGRWRLAPCDPV
THSSRQYLGDTLVLETTWVTASGRARVLDFMPLGEVNSVVRIVEGLSGETHFEMDLVMRF
DYGRSVPWVERLDPLTLSAVAGPDRLILCSTVPPQARDHHTGCRFRVSTGQRQVFSLRHQ
PSHLPVQPDCNIDQALANTCEQWQAFADRCPQVGPYTALVRRSLLTLKAMTYAPTGGIVA
AVTTSLPERVGGERNWDYRFCWLRDATMTLLAFMNLGYFDEAQAWREWLLRSVAGNPEQM
QIMYGLAGERDLQEYTLPWLAGYEHSQPVRVGNAASAQRQLDIYGELADAMTQAIKGGLP
RHPRSAAISRLILPYVERIWREPDEGIWEVRGGRQQFVHSKVMAWVAFDRAAGLADTTEE
GRERGQHYRQVADEIHRDVCEHGLDPSGRFFVHAYGSTEMDASLLQIALTGFLPADDPRF
MRTLEQIEQRLMKNGLLLRYDSDSCSDGLTPGEGTFLVCSFWLADVYVLLGRQAKAEALY
QHLTGLCNDLGLLAEQYDPAGQRMLGNFPQAFSQIGIINTALNLHRAQCPARDRARCG