PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4433 (450 amino acids)

SeqID: PP_4433 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 81171069: Proline/betaine transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4433
MSISTHPASTISSSTIKSLNMSMPRKAVVAAALGNATEWFDYGIYAYGLTFISAALFPGS
QSEALYFGLATFAISFLIRPLGGMFWGPLGDRIGRKRVLAMTVLMMSVATFIIGILPTYQ
SVGWIAPVALIALRLIQGFSTGGEYGGAATFLAEYAPDKRRGFYGSFLEFGSLAGFSLGA
LVTLSVSVVIGDAAMYEWGWRVPFLIAAPLGVIAVYLRTRIEDTPVFLELEKKMASEPVR
PKTSIAEIFGKYKKAALSLGVLVAALNITYYILLAYMPTYMHKEVGASENMSLLAPLVGM
LAMMMFIPFAGRISDVVGFKKMWFFSLIGLFILAIPMFKLMSTGLTGSMIGFAVLGAFFV
PQLATISAMFPAMFPTQIRYAALAIVYNISASIFGGTTPLVCDQIIKFLGSPDAPAYYIM
VASALGIIALFFVIETKGCSIRGDGIPGAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory