PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4434 (432 amino acids)

SeqID: PP_4434 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4434
MRVLILGSGVVGTVSAYYLAREGFEVVVVDRQDGPAMETSFANAGQVSPGYASPWSAPGV
PLKAIRWMLQQHAPLAIKPTSSLDQYRWMIQMLRNCNPASYAVNKERMVRISEYSRDCLD
ELRAETGISYEARQLGTTQLFRTQAQVDNAAKDIAILKQSGVPFELLDRDGIAKAEPALA
SVRDKLAGALRLPNDQTGDCQMFTRKLAKMAEELGVEFRFGCNIDRLECSGDTISGVWID
GKLEVADQYVLALGSYSPHMLKPLGIQAPIYPLKGYSLTIPITDASMAPSSTILDETYKV
AITRFDDRIRVGGMAEIAGFDLSLNARRRDTLELVVGDLYPKGGDLTKATFWTGLRPATP
DGTPIVGKTKYRNLFLNTGHGTLGWTMSCGSGRLLADLMAGKKPKISAKGLDISRYSNQK
EAHNHGNPATAL