PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4737 (936 amino acids)

SeqID: PP_4737 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4737
MSLPAAFLRDAERLIPAERRFDDPTSTLAFGTDASFYRLIPKLVVRVESEDEVVGLIKLA
QRERVPVTFRAAGTSLSGQAISDSVLIVLGDNWNGREIRRQGEQIRLQPGVIGAQANAWL
APFGRKIGPDPASINACKIGGIVANNASGMCCGTAQNTYHTLAGLRLVLADGTRLDSEDP
ASVAAFESSHAELLEALARLGRETRANTALAERIRHKYRLKNTTGLSLNALVDYDQPLDI
LQHLLVGSEGTLGFISAVTYDTVPDHPHKASALLVFPSVESCCRAVPVLKQQPVSAVELL
DRRSLRSVQNMPGMPLWVKGLSDNACALLIESRAASQSLLHEQLQQIMASIADFPLEQQV
DFSEDPAVYNQLWKIRKDTFPAVGAVRQTGTTVIIEDVTFPVEQLAEGVNRLIQLFDKHH
YDEAIIFGHALEGNLHFVFTQGFNSAEEVARYQAFMDDVAQLVAVEFGGSLKAEHGTGRN
MAPFVELEWGHDAYQLMWKLKRLLDPNGILNPDVVLSEDPDIHLKNLKPLPAADKIVDKC
IECGFCEPVCPSKGLTLSPRQRIVMWRDIQAKQRAGIDTRELMQSYQYQGIDTCAATGLC
AQRCPVGINTGELVKKLRSQAADHAKTADWLAEHFHTALSGARLTLTAANTARKLLGAPR
LGRLSASLSKASKGRLPQWTPAMPQPLRPLAFGATSNDARPRVVYLAACVSRVMGPAYAD
REQSSLLDKTRALLEKAGYQVVFPDNADSLCCGQPFASKGYPEQAEHKRQELITALLHAS
RGGLDPIYCDTSPCTLRLVQDLSDTRLDLYDPVRFIRTHLLDRLEFTPQDEPVAVHVTCS
TQHLGESQALIDLARRCSKQVVIPEGIHCCGFAGDKGFTTPELNAHSLRSLKDAVQYCSE
GISTSRTCEIGLSSHSGIDYHGLVYLVDRVTRPRSL