PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4780 (550 amino acids)

SeqID: PP_4780 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599167: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4780
MSLHQYAETHEVTNQPPPLDGANLYRLDLPLQEWSRRFGAGWAESRIDAYGALAGGPLMQ
AGFLANAHKPEFSSHDRYGHRIDLVEFHPAYHELMRTAVEHGLPSLPWAEPRAGAHVARA
SMTYLHSQAEAGTGCPLTMTFAAVPALRLQPELAEYWLPKILACEYDPRNVGDRHKAGVT
LGMAMTEKQGGTDVRANTTRAYPVGAPGPGQAYELVGHKWFCSAPMCDAFLTLAQTEKGL
SCFLLPRHRPDDNRNQFYIQRLKNKLGNSSNASSEVEFRGALAWMIGEEGRGVPTIIEMV
AMTRFDCMVGSSALMRQALTQAAHHCAHRKVGGRVLNEQPLMQNVLADLALESEAALALS
LRMGQALEQLDDPQQAHFARLVTAVGKYWICKRAPAMINEAAECLGGAGYVEDSILPRLY
REAPVNSTWEGSGNVQCLDVLRALSKEPGVLDALFVELGDGHGDPRLAAHIGNLKGAFAD
TGDMQYRARQLTEDIALALQAKLLLEAGNADVSDAFIGSRLAGGGRVYGALPRGVNVMAL
VTRATPAWPL