PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_5409 (611 amino acids)

SeqID: PP_5409 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_5409
MCGIVGAVAERNITAILIEGLKRLEYRGYDSAGLAVLTQNGELQRRRRIGKVSELEVAVA
DDPLAGQLGIAHTRWATHGAPTEGNAHPHFSGNDVAVVHNGIIENHEELREELKGLGYVF
TSQTDTEVIVHLIHHTLKSIPDLTDALKAAVKRLHGAYGLALISAKQPDRLVAARSGSPL
VIGLGLGENFLASDQLALRQVTDRFMYLEEGDIAEIRRDQVSIWDQQGNKVQRETVQYHE
GAEAADKGAYRHFMLKEIHEQPSVVQRTLEGRLGKDNVLVQAFGPQAADLFAKVRNVQIV
ACGTSYHAGMVARYWLESLAGIPCQVEVASEFRYRKVVVQPDTLFVSISQSGETADTLAA
LRNAKELGFLGSLAICNVGISSLVRESDLTLLTLAGPEIGVASTKAFTTQLVSLMLLTLA
LGQVRGTLEAGVEAELVEELRRLPTRLGEALAMDATVEKIAELFADKHHTLFLGRGAQYP
VAMEGALKLKEISYIHAEAYPAGELKHGPLALVDNDMPVVTVAPNNELLEKLKSNLQEVR
ARGGELVVFADEHAGMTNGEGTHVIKVPHIADALAPILYTIPLQLLSYYVAVLKGTDVDQ
PRNLAKSVTVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory