PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_1188 (484 amino acids)

SeqID: Pf1N1B4_1188 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_1188
MSTSTIIPTVAVEEDFRARAHKALADTQLRNNFRSAMDSLMSKRAASFSDAFEREHLRVL
GNAVRARALSKLPDLLEQLEQNLTRNGVTVHWAETVDEANGIVLSIIRAHEARQVIKGKS
MVSEEMEMNHVLAAQGIECLESDMGEFIVQLDHEKPSHIIMPAIHKNAGQVASLFHDKLG
VEYTKDVDQLIQIGRKVLRQKFFEADIGVSGVNFAVAETGTLLLVENEGNGRMSTTVPPV
HIAVTGIEKVVENLRDVVPLLSLLTRSALGQPITTYVNMISGPRKEHELDGPQEVHLVLL
DNGRSQAFADSELRQTLNCIRCGACMNHCPVYTRIGGHAYGEVYPGPIGKIITPHMVGLA
KVPDHPSASSLCGACGEVCPVKIPIPALLRRLREENVKAPDSPHQVMRGQGSKYSRKERF
IWNAWAKLNSSPTLYRLFGFFATRLRALTPSNVGPWTQNHSAPKPAARSLHDMAREHLAK
QGDR