PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_1477 (655 amino acids)

SeqID: Pf1N1B4_1477 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_1477
VSELIRVPDIGSGEGEVIELFVKVGDRIEADQSILTLESDKASMEVPAPKAGIIKSLKVK
LGDRLKEGDELLELEVEGAAAPAPAAAAAAAPAAKAEAAPAAAKAPAAPAAAPAAASVQQ
VHVPDIGSSGKAQIIEIQVKVGDTVEADQSLITLESDKASMEIPSPAAGVVKAISVKLND
EVGTGDLILDLEVAGAAAPAAAAPAQAAAPAAAAPAPAAAAPAAPVADTVQDIHVPDIGS
AGKAKIIEVLVKAGDTVVADQSLITLESDKASMEIPSPAAGVVESVSIKLDDEVGTGDLI
LKLKVKGAAPAAAPAPAAAAPSAPAPAPAAAAPAAPAPAAPVAAPAKPGAKVHAGPAVRQ
LAREFGVELSAVGASGPHGRILKEDVQVYVKAMMQKAKEAPTAAAGATGGAGIPPIPVVD
FSRFGEIEEVPMTRLMQIGASSLHRSWLNIPHVTQFDSADITELEAFRIAQKAVAEKAGV
KLTILPLLLKSCAHLLKELPDFNSSLAPSGKAIIRKKYVNIGFAVDTPEGLLVPVIKNVD
QKSLLQLAAEAAALAAKARDKKLTADDMQGACFTISSLGHIGGTGFTPIVNAPEVAILGV
SKATIQPVWDGKAFQPKLMLPLSLSYDHRVINGAAAARFTKRLSDLLADIRTILL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory