PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_1712 (219 amino acids)

SeqID: Pf1N1B4_1712 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84028671: Glutamine transport system permease protein glnP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_1712
MASSGLELLWVSLPQLGKGAAQTLSISFLSIVISTVGGVLYGVLRTLNSEWLNGFLRVYL
ELFRAIPVLVWLYLLFFGLPIFFGLSIPSFWCAVLVLSLWGASEVGEVVRGALHSLPRGQ
REAGLSIGLDGPQLYGYVLLPQALKRMTPPTINVYTRIIKTSSLAVLIGVVDVIKVGQQI
IERTYESVLIYGALFLFFFFICYPLSAASRVLERRWTQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory