PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_2236 (957 amino acids)

SeqID: Pf1N1B4_2236 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600406: glycine cleavage system protein P1[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            7.33
    CytoplasmicMembrane    2.64
    Periplasmic            0.03
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_2236
MSQLPSLSQLRDPNTFLRRHLGPDAAEQQAMLDSLGLGSRVELIEQTVPPGIRLNRPLDL
PPALDEEAALAKLRGYAEQNQIWTSLIGMGYHGTLTPAVILRNVLENPGWYTAYTPYQPE
IAQGRLEALLNFQQLTIDLTGLELANASLLDEATAAAEAMALAKRVAKSRSNLFFVDENC
HPQTISVVRTRAEGFGFELIIDAVDNLKQHQVFGALLQYPDTHGEVRDLRPLIDHLHAQQ
ALVCVATDLLSLLLLTPPGELGADVVFGSSQRFGVPMGYGGPHAAFFASRDEYKRAIPGR
IIGVSKDARGNVALRMALQTREQHIRREKANSNICTAQVLLANIASFYAVYHGPEGLKRI
AQRVHRLTCILAAGLERHGITRLNQNFFDTLTLEVGGTQTAIIESAQAAQINLRILGRGQ
LGLSLDETCDETTVAKLFDVFLGADHGLNVDDLDAETLVSGIPAGLQRSTSYLRHPVFNA
HHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPQFANLHPFVPKEQ
VVGYSLMIAELERWLCAITGFDAICMQPNSGAQGEYAGLLAIRKYHESRHQGARDICLIP
SSAHGTNPASAQMAGMRVVIVECDEGGNVDLDDLKEKATEAGDKLACLMATYPSTHGVYE
EGISEICEVIHSHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGM
GPIGVRAHLAPFVANHPVVPIDGPLPENGAVSAAPWGSASILPISWMYIAMMGPQLADAS
EVAILAANYLAQHLAGAFPVLYTGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGF
HAPTMSFPVPGTLMVEPTESESKAELDRFIGAMLSIRAEITEVQNGNWPAEDNPLKRSPH
TLADITGVWERPYSIERAVTPDAHTKAHKYWPVVNRVDNVYGDRNLFCACVPVDEYR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory