PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_2416 (567 amino acids)

SeqID: Pf1N1B4_2416 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114919: Choline dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_2416
MSQEFDYIIIGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGR
RYNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDNWSKLPGLEDWTY
LDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNG
YQQEGFGPMDRTVTPNGRRASTARGYLDVAKKRSTLTIVTHALTDKILFEGKRAVGVRYL
IGAAEERVEVRARKEVLLCSGAIASPQILQRSGVGPAELLKKLDIPVVHDLPGVGENLQD
HLELYLQYACTQPVSLYPSLLLHNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPEFDWP
NIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRIQAKSKDPREYPSILFNYMATE
QDWQEFRDGIRLTREIMQQPALDAFRGREISPGIDVQTDEQLDKFIREHAETAFHPSCSC
KMGTDEMAVVDGEGRVHGMQALRVVDASIMPIITTGNLNAPTIMMAEKIADKIRGRKPLP
RSKATYYVAGDAPVRGKPLRDVSLTAQ