PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_2478 (725 amino acids)

SeqID: Pf1N1B4_2478 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1170877: Malate synthase G]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_2478
MTEHVQVGGLQVAKVLFDFVNNEAIPGTGLTADTFWAGADKVIHDLAPKNKALLAKRDDF
QARIDAWHQARAGVAHDAVAYKAFLQDIGYLLPEAADFQATTQNVDDEIARMAGPQLVVP
VMNARFALNASNARWGSLYDALYGTDAISEADGAEKGKGYNKVRGDKVIAFARAFLDEAA
PLAAGSHVDSTGYKIIDGKLVVALKGGSNTGLRDDAQLIGFHGDTAAPTAILLKNNGLHF
EIQIDASTPVGQTDAAGVKDILMEAALTTIMDCEDSVAAVDADDKVVIYRNWLGLMKGDL
SEEVSKGGQTFTRTMNADRTYTALDGSELSLHGRSLLFVRNVGHLMTIDAILDKDGNEVP
EGILDGLVTCLAAIHSLNGNSSRKNSRTGSVYIVKPKMHGPEEAAFTNELFGRIEDVLGL
PRNTLKVGIMDEERRTTVNLKACIKAAAERVVFINTGFLDRTGDEIHTSMEAGPMVRKAD
MKAEKWISAYENWNVDIGLSTGLQGRAQIGKGMWAMPDLMAAMLEQKIAHPMAGANTAWV
PSPTAAALHALHYHKVDVFARQAELAKRARASVDDILTIPLAVNPDWTAEQIKNELDNNA
QGILGYVVRWIDQGVGCSKVPDINDIGLMEDRATLRISSQHIANWLRHGIVTEDQVMESL
KRMAPVVDRQNASDPLYRPLAPNFDSNIAFQAAVELVVEGTKQPNGYTEPVLHRRRREFK
AANGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory