PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_2688 (415 amino acids)

SeqID: Pf1N1B4_2688 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2507237: Gamma-glutamyl phosphate reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_2688
MTRLGRAAREASRVIGRASTAQKNRALQAAANALDAARAELTAANELDLAAGRANGLEPA
LLERLALTPERIDGMIVGLRQVAALPDPVGAIRDMSYRPSGIQVGKMRVPLGVIGIIYES
RPNVTIDAASLCLKSGNATILRGGSEAIHSNRAIAACIQRGLAEAGLPAAVVQVVETTDR
AAVGALITMPEYVDVIVPRGGRGLIERVSRDARVPVIKHLDGICHVYVSAHADLPKAQRI
AFNAKTYRYGICGAMETLLVDQAVAKDFLPSMAAQLREKGVELRGCERTRAIIEAVAATE
EDWHTEYLAPILSIRVVDGLDQAIEHINKYGSHHTDSIVSENLADTRRFVAEVDSSSVMI
NTPTCFADGFEYGLGAEIGISTDKLHARGPVGLEGLTCEKYIVVGDGQLRGQESL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory