PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_2849 (645 amino acids)

SeqID: Pf1N1B4_2849 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_2849
MFDISTFPKADAVRRAAQLSQDDYQRLYRQSIEHPSTFWAEQATRFLDWSAPWQTVQRYD
LKTGEASWFAGGQINVSYNCIDRHLEKRGDQIAIIWEGDDPAESAQITYKKLHHNVCRLA
NVLKSRGVKKGDRVCIYMPMIPEAAYAMLACARIGAIHSVVFGGFSPDSLRDRILDADCR
TVITADEGVRGGKFVPLKQNVDTALQSCPNVNTVIVVERTQGQVNWVEDRDIWYHQALRD
VSDDCPPEPMDAEDPLFILYTSGSTGKPKGVMHTTGGYLLQAAMTFKYVFDYRDGEIFWC
TADVGWVTGHSYIVYGPLANGATTLIFEGVPSYPSTSRFWQVIDKHHVNIFYTAPTALRA
LMREGPEPLKETSRESLRLLGTVGEPINPEAWEWYFNTVGEQRCTIVDTWWQTETGGIMI
SPLVSTQRVKPGCATQPMFGVQPVLLDEHGKEIKGAGSGILAIKSSWPAQIRSVYGDPKR
MIETYFKPYPGYYFTGDGARRDEDGDYWITGRIDDVINVSGHRIGTAEVESALVLHDSIA
EAAVVGYPHDVKGQGIYAFVTPMNGTEPNDELKKQLLAHVSKEIGNFAKPDLIQWAPALP
KTRSGKIMRRILRKIACNELDSLGDTSTLADPSVVQGLIDQRLNQ