PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_3261 (763 amino acids)

SeqID: Pf1N1B4_3261 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_3261
MKKLCLLGLFVSLASHTVLAATTPAPIENKDAFISHLMKQMTLDEKIGQLRLISIGPEMP
REMIRKEIAAGNIGGTFNSITRAENRPMQDAAMRSRLKIPMFFAYDVIHGHRTIFPIPLA
LASSWDMDAIGRSGRIAAKEAAADSLDITFAPMVDISRDPRWGRTSEGFGEDTYLVSRIA
GVMVKAFQGTGANAADSIMASVKHFALYGAVEGGRDYNVVDMSPVKMYQDYLPPYRAAID
AGAGGVMVALNSINGVPATANTWLMNDLLRKEWGFKGLAVSDHGAIFELIKHGVAADGRE
AAKLAIKAGIDMSMNDTLYGKELPGLLKAGEIEQKDIDNAVREVLAAKYDMGLFKDPYLR
IGKAEDDPADTYAESRLHRAEARDVARRSLVLLKNQGETLPLKKTAKIALVGPLAKAPID
MMGSWAAAGRPEQSVTLFDGMTHALGAQSTLIYARGANITSDKKILDYLNFLNFDAPEVV
DDPRPANVLIDEAVKAAQQADVVVAAVGESRGMSHESSSRTDLNIPAAQRELIKALKATG
KPLVLVLMNGRPLSILEENEQADAILETWFSGTEGGNAIADVLFGDYNPSGKLPITVPRS
VGQIPTYYNHLSIGRPFTPGKPGNYTSQYFEDTTGPLFPFGFGLSYTQFSLTDMALSSTT
LNKTGKLDASVVVKNTGKRDGETVVQLYIQDVTGSMIRPVKELKNFQKVLVKAGEQKVVH
FTITEDDLKFYNAQLKYAAEPGKFNVQIGLDSQDVTQQSFELL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory