PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_3380 (423 amino acids)

SeqID: Pf1N1B4_3380 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 85690756: Probable galactarate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_3380
MADTSQASSVRWRIFAIIFALTMVNLIDRVSLSIAMPTIAHEFSLSPSMQGLILSSFFWA
YALLQIPGGWMIDRFGPHRVISWSTGLWGMFQVLAAFATGGLSLLFARVALGAAEAPLFP
SGGKLISLWLAPSERSRGAVLMDSGSPLGVALGGLIIAYLIASLDSWRLAFVIAGIATLV
LAWLAWRYLRDDPASHPQVNAAELEKINAGRATPAAEAARIPVKGLGIAARSLSGLLIGR
ACWAMVYFGLLTWGPSYLAQARGFDIKGIGAATFVIFVCGALGSLTGGFLCDGLIRKGVS
RGVAVKSLLAFSGLVALGAFLLLPTLSNPFAAVALLAMTAFFLMWGSLYWSFPALLAAPA
RVGLIGGVMNMAGSTGGIAVPILVGIIVQMTGGFAPVLGFFAVCSAVFVLATLFISLEEV
RHG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory