PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_3419 (763 amino acids)

SeqID: Pf1N1B4_3419 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596923: periplasmic beta-glucosidase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_3419
MKRLRLLCALIGFTSLPVAADMASLSKEAFVSDLINQMTLEEKIGQLRLIAIDEKMTPEK
IREEIAAGRIGGTYGSVSRFVNRPMQDASQQSRLKIPMFFGWDVIHGHRTIFPIGLALAS
SWDIGAIELSGRIAAKEASADGIDLTFAPMIDIARDPRWGRTSEGFGEDTYLVSRIAKAM
VQAYQGASPNAPDSIMASAKHFALYGAVEGGRDYNSVDMGLARMHQDYLPPYRSAIEGGA
GAMMVALNSINGVPAASNAWLMQDLLRKAWGFKGLVISDHNGINDLVQHGVAKNHREAAR
LAIKAGVDMSMNDFSYGPELQGLLESGAISQSNIDNAVREVLGAKYDMGLFEDPYRRIGI
ASEDPADNNAEHRLHRAQAREVARKTLVLLKNENGLLPLKKEGVIALIGPLAKSAVDIMG
SWSASGVAEQSVTIYDGLKNAMTQGSLIYARGANLEEDQEVVKYLEYQGVSKIENDARPA
AEMIDEAVKAAQQADVVIAVVGEPRSMSHEAASRTSLDLPGRQSELITALKATGKPLVLV
LMNGRPLSIGKEQKQADAILETWYSGSEGGNAVADVLFGDYNPSGKLPITFPRSVGQIPN
YYSHLNTGRPYIAGALRNYTSQYFDQSHGPLYPFGFGLSYTDFSLTDMALSSTTLSKTDN
LVASVMVKNIGQRDGETVVQLYIRDVVGSVSRPVKELKNFQKIMLKAGEEKAVHFSINEN
DLKFFNSQLEYAAEPGEFRVQIGLDSQDVKEQSFELLSEQGSG