PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_348 (735 amino acids)

SeqID: Pf1N1B4_348 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_348
MIGRLVVVGLGLIGGSFAKGLRESGLCREVVGVDLDPQSRKLAVELGVVDRCEEDLAAAC
QGADVIQLAVPILAMEKLLALLAGMDLGQAILTDVGSAKGNVVRAATEAFGGMPTRFVPG
HPIAGSEQSGVEASNAELFRRHKVILTPLDQTDPAALAVVDRLWRELGADVEHMQVERHD
EVLAATSHLPHLLAFGLVDSLAKRNENLEIFRYAAGGFRDFTRIAGSDPVMWHDIFLANR
EAVLRTLDTFRSDLDALRDAVDAGDGHQLLGVFTRARVAREHFSKILARRAYVDAMNSND
LIFLAQPGGRLTGRIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMG
VVIEGPHHGRVTIHGVGLHGLKPAPGPIYLGNSGTSMRLLSGLLAAQNFDSTLTGDASLS
KRPMNRVANPLREMGAVIETAAEGRPPMTIRGGNKLKGLTYTMPMASAQVKSCLLLAGLY
AEGKTTVTEPAPTRDHTERMLRGFGYPVTVNGATASVESGHKLTATHIEVPGDISSSAFF
LVAASIAEGSELVLEHVGINPTRTGVIDILRLMGADITLENQREVGGEPVADLRVRAAKL
KGIEIPEALVPLAIDEFPVLFVAAACAEGRTVLRGAEELRVKESDRIQVMADGLLALGVK
CEPTPDGLIIDGGQIGGGEVHGHGDHRIAMAFSVASLRATAPIRIHDCANVATSFPNFLA
LCAQVGIRVAQEAQS