PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_349 (370 amino acids)

SeqID: Pf1N1B4_349 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598361: histidinol-phosphate aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices: TMHMM

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_349
MSGNFLALAQPGVQQLSPYVPGKPVDELARELNLDPANIVKLASNENPLGASPKALAAIR
EALTELTRYPDGNGFALKTLLADQCRVELNQVTLGNGSNDILELVARAYLAPGLNAVFSA
HAFAVYPIVTQAVGAQAKVIPAKDWGHDLSAMLAAIDADTRVVFIANPNNPTGTWFDAQA
LDDFLQDVPAHVLVVLDEAYIEYAEGSDLPDGLDYLAAYPNLLVSRTFSKAYGLASLRVG
YGLSSAIVADVLNRVRQPFNVNSLALAAACAALQDVEYLAESRRLNESGMQQLQAGFREL
GLSWIPSKGNFICVDLGRVAAPVFEGLLREGVIVRPVANYGMPNHLRITIGLPAENSRFL
EALTKVMARG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory