PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_3853 (484 amino acids)

SeqID: Pf1N1B4_3853 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597575: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_3853
VIQFLLNQELRSEHALDPNLTVLNYLREHVGKPGTKEGCASGDCGACTVVVGELQTDDDG
REHIRYRSLNSCLTFVSSLHGKQLISVEDLKHQGELHSVQKAMVECHGSQCGFCTPGFVM
SLFALQKNSDQPDAHKAHEALAGNLCRCTGYRPILAAAEQSCCGKQPDQFDAREAETIAR
LKAIAPTDIGELNSGDKRCLVPLTVADLADLYDAYPQARLLAGGTDLALEVTQFHRTLPV
MIYVGNVAEMKRIERFDDRLEIGAATALSDCYDALKAEYPDFGELLQRFASLQIRNQGTL
GGNIGNASPIGDSPPLLIALGAQIVLCKGETRRTMALEDYFIDYRVTARQESEFIEKIIV
PRASVEQLFRAYKVSKRLDDDISAVCAAFNLRIDTGVIADARVAFGGMAAIPKRAKNCEA
ALLGAPFNNATLERACAALAEDFTPLSDFRASKEYRLLSAQNLLRKYFIELQTPHIETRV
TAYV