PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_3888 (913 amino acids)

SeqID: Pf1N1B4_3888 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_3888
MPSLDSLKTLKTLQVDDKTYHYFSLPEAAKSLGDLDKLPMSLKVLLENLLRWEDEKTVTG
ADLKAIAAWLKERRSDREIQYRPARVLMQDFTGVPAVVDLAAMRAAMAKAGGDPQRINPL
SPVDLVIDHSVMVDKYASASAFGQNVDIEMQRNHERYAFLRWGQSAFNNFSVVPPGTGIC
HQVNLEYLGRTVWTKDEDGRTYAFPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPEVIGFKLTGKLKEGITATDLVLTVTQMLRKKGVVGKFVEFYGDGLADLPLADR
ATIANMAPEYGATCGFFPVDEVTLEYLRLSGRTPQTVKLVEAYSKTQGLWRLPGKEPVFT
DSLALDMGSVEASLAGPKRPQDRVSLPNVAQAFTDFLGLQFKPSSKEEGRLESEGGGGVA
VGNADLIGEADYHHEGSTYRLKNGAVVIAAITSCTNTSNPSVMMAAGLVAKKAVEKGLKR
KPWVKSSLAPGSKVVTDYYKAAGLTQYLDELGFALVGYGCTTCIGNSGPLPEPIEKAIQK
ADLTVASVLSGNRNFEGRVHPLVKTNWLASPPLVVAYALAGTVRIDISSEPLGNDKDGHP
VYLRDIWPSTKEIADAVTQVNTAMFHKEYAEVFAGDEQWQAIEVPQAATYVWNNDSTYIQ
HPPFFDDIGGPAPVVKDVEGAKVLALLGDSVTTDHISPAGNIKADSPAGHYLREQGVEPR
DFNSYGSRRGNHQVMMRGTFANIRIRNEMLGGEEGGNTIYIPTGEKLPIYDAAMRYQASG
TPLVVIAGQEYGTGSSRDWAAKGTNLLGVKAVIAESFERIHRSNLVGMGVLPLQFKLDQN
RKSLNLTGKETLDILGLTGVELTPRMNLTLVVTREDGNTEKVEVLCRIDTLNEVEYFKAG
GILHYVLRQLIAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory