PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4098 (400 amino acids)

SeqID: Pf1N1B4_4098 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3025166: Putative nucleoside transporter yegT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4098
MMFLQFFIWGGWFVTLGTFLSSNLGASGGQIGMAFSTQSWGAIIAPFVIGLIADRYFNAE
RILAVLHLIGAVLLLQLYRAPDFSAFYPFVLAYMMIYMPTLALVNSVAFRQMRDPALEFS
RIRVWGTIGWIVAGVVISFVFAWDSQQAISSGGLRNTFLMSAIASFVLGIYSFSLPRTAP
LKPEPGSVGLKQMLGLDALGLLKDRSYLVFFIASILICIPLAFYYQNANPFLAEIGVTNP
TAKMAIGQVSEVLFMLLLPLFIQRFGIKIALLVGMLAWALRYLLFAYGNNGDLAFMLFTG
IALHGICYDFFFVSGQIYTDAKASERFRSSAQGLITLATYGLGMLIGFWVAGAVTDHYAS
ADSHDWKSIWLFPAGFALAIFFCFSLAFKGRQSVAAPSSI