PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4246 (585 amino acids)

SeqID: Pf1N1B4_4246 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2495662: Glycolate permease glcA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4246
MVWQQIYDPFDNPMLSTIMAAVPVVVMLASLAFFHIKAHLAALLALGSALLIAIFAFGMP
ANMAGSAALYGAANGLLPIGWIVLNIIFLHRLTTENGSFKVLQDSLARITDDRRLQLLLI
AFCFGAFFEGAAGFGTPVAVTGAILIGLGFSPLAASGLALIANTAPVAFGALGTPIITLA
KVTGLDEMELSMMVGRQLPFFSVIVPFWLIWAFAGWRKMLEIWPAILIAGVSFAVPQFLV
SNYHGPMLVDVIAALISMACLTGFLKVWKPATVHTSAALSGRADNSRVDVDPDEEPSATF
ASDAKPAVMRAWMPWIILTVFVFAWGTQSFKNLFDTRPVMDPQTHSAKLDPQGKPMREAN
PIFAPTLTFTTIHQQIEKVPPVVPVAKTEDAIYKFNWFTSTGSGILLAALLGGLLMGYSI
PQLLHHYLRTLWVVRYSLITIVAMLALGFLTRYSGLDATMGLAFAATGIFYPMFGTLLGW
LGVALTGSDTASNVLFGGLQRVTAEQLGLSPVLMAAANSSGGVMGKMVDAQSIVVASTAT
RWYGHEGEILRYVFFHSVVLAILVGGLVTLQAYVAPFSHMVVGGN