PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4328 (374 amino acids)

SeqID: Pf1N1B4_4328 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595489: agmatine deiminase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4328
MSTRREFIKHVSVVAGLGAAVSIGLGLTPLNAGAATQGVWRMPDEGDKHRRAFVAFGAQE
AIWEDFTPDVQEAIGLIARTIAHYEPVTVFCRSNERGLAEEHCGTTNITYVTTELDDVWM
RDIGANFVIDGAGGLGAVDFNFNGWGNKQQYSKDAQVAALVADTVDADHIRSELVGEGGG
IEVDGHGTGIMTESSWINSNRNPDWSKAEVEQELKARLGLRKIIWLPGIKGKDITDAHVD
FYARFVKPGVVIANLDNDPESYDRKVTLAHLEILKQATDADGRKLQVHTVSPPLNPRKSK
FSRNNPDFAAGYINYFVINGAIIAPEFGDKAADTRAFDLLSELYPDREVVQLNIDAIAAG
GGGIHCVTSHQPQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory