PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4356 (432 amino acids)

SeqID: Pf1N1B4_4356 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4356
MKQDSVKQKHVNSYYAATRNFTGDFPVLEQAVDCDVCVIGAGYTGLSSALFLSEAGYSVT
VLEAAKVGFGASGRNGGQLVNSYSRDVDVIEERYGDKTAEVLGSMIFEGADIIRSRIKEY
DIQCDYRPGGIFAALNKKQLNGLAEQKSSWERYGNKNLRMLDAADIKREVGCDNYVGGLL
DMQGGHIHPLNLALGEAAAIIRLGGKIYEQSAAVEITYGEPITVRTAKGVVRAKYLLIAG
NAYLPQDLDNRVTRKSMPCGSQIVVTEPLSEKVARSLIANNYCVEDCNYLLDYYRLTADN
RLLYGGGVVYGAREPDDIEQLIRPKILKTFPQLKDVKIDYRWTGNFLLTMSRMPQFGRIE
KNAYYMQGYSGHGVTCSHLAGKLISEMIRGDAERFDAFASLPHMPMLGGRTFQAPLTAMG
AAYYALRDRFGI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory