PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4430 (919 amino acids)

SeqID: Pf1N1B4_4430 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 585479: Cystathionine beta-lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4430
MNRTVTPGQLQQWLFDGQEIALFDVREHGQYGEAHLFHGVNLPYSRLELEVRRLAPNPQV
RLVIYDQNGGDVVARAAQRLQALGYGRVHILDGGADGWQAAGLQLFAGVHVPSKAFGELV
EEVSHTPHVTARQLAEWQARGESLVVLDGRPFDEYRKMTIPGSVCCPNGELGYRVHDLVP
DDSTPIVVNCAGRTRSIIGAQTLINLGLKNPVYALENGTQGWDLEDLQLEHGSTRRYADE
VSSKTLPLQRLAAAQLAERAGVKTVATAQVEQWAGEAERSLFLCDVRTAEEFAAGSLPGA
QHTPGGQLIQSTDLYIGVRQARVVLIDSDGVRAPIIASWLRQLGHEAYVLADGVSSGLAL
PAVETPAHEALPVITAQALSDALKDNAVALIDLRPSMTWRKGHIAGSRWSIRSLLATEVM
GEQRPLVLLADDPLLAAFATLELPNAQRTQTRLLDGGVEAWRAAGFALQEDANTPPDHQC
IDFLFFTHDRHSGNKDAARQYLAWEIGLLAQMSADEIASLKPLRAQSQATRDARIRTRLV
HSARTEKGSGGRAVNVPVTRLSTVLFDNLAQMRDARARRDSERVLSYGARGNPTAFALED
LVTELEGGYRTRLYGTGLAAVAQTFLAYLRPGDHVLITDAVYAPVRRLARELLEPFGIQV
SYFAPDGSGLQAQLQANTKMVYTEVPGSLLYELCDLPAIAALCKPRGILLAVDNTWGSGY
LYRPLTLGADISIMALTKYLCGHSDVVMGSVCTRQEVWQPLSSMSDTFGIAVSPDDAYLV
LRGARTLAPRLDVHERQALEIAQWLQAQPQVKRVFHPALPDHPHHALWRRDFNGSNGLLS
FELREADATYVERFIDALQVFGLGASWGGYESLVTVADTKDRNSAADRALNPVLRLHIGL
EDVDALIEDLQRGFAAAVD