PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4450 (549 amino acids)

SeqID: Pf1N1B4_4450 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4450
MQTSLDEYDYIVVGAGPAGCLLANRLSANPQHRVLLLEAGGRDNYPWIHIPVGYLFCIGN
PRTDWCFKTETQPGLQGRALSYPRGKVLGGCSSINGMIYMRGQAGDYDGWAAEGNAGWGW
QDVLPLFKQSENHFAGDSEFHGAAGQWRVERQRLSWPILDAFRTAAEQSGIASIDDFNQG
DNEGCGYFQVNQKAGIRWNAAKAFLKPIRQRANLTVLTDVEVDRVLLENGRASAVSARWQ
DQAKTFKARKEIVLCAGAVGSPGILQRSGIGPRPLLQKLGIGVTHELPGVGGNLQDHLQL
RLIYKLENARTLNQIAGTLWGKMGMGLRYLYDRSGPLSMAPSQLGAFARSGPEQTSANLE
YHVQPLSLERFGEPLHAFPAFTASVCDLRPQSRGRIDIRSADPREAPLIQPNYLSHPEDL
RVAADAIRLTRRIVSAPALQAFKPVEYLPGDSLQSEEQLHEAAARIGTTIFHPVGTCRMG
NDAHAVVDAELRVHGIPGLRIADASIMPRITSGNTCSPTLMIAEKAAQLMLSPSTRSLNP
QKELLSNPL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory