PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4463 (360 amino acids)

SeqID: Pf1N1B4_4463 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4463
MQRIPCVLMRGGTSKGPVFLAWDLPVSIEERDELLLAVMGSGHELEIDGIGGGSPQTSKV
AIVSPSLHPDADVDYLFVQVMVSQRRVDTAPNCGNMLCAVGPFAIEQGLVKAVGELTRVR
IRNLNTGTFVTSDVQTPNGKVSYEGDTAIDGVPGSAAPVQLTFLDAAGSKTGKLFPTGST
QDWFDDIPVTCIDMAMPMLIIEARHLGKRGDETPAELDADKDFMRRLEALRLRAGMAMGL
GDVSDKVIPKPVLVAPAKAGGTLQVRYFMPHNCHRALAITGSIGLATACVSEGSVVAQML
GNTGGPRLQQVRIEHPSGGIDVVLSYTGKNGDTIRASVVRTARRLFSGFVYAPVSQRLAG