PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4553 (956 amino acids)

SeqID: Pf1N1B4_4553 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4553
MDYRNFVRPKFVELLQALGLECEFQRALGSKLFYRDRNGAQVTVTDFLGGYGAALFGHND
PQFVDQLCTLLRNDVPFNAQMSIRGTAGELGRALSEAFNRELKNTERYISTFSNSGAEAV
EIAVKHAEYRRQKTLQKQFDDLDFALAKLTASDRAYRELDVDDLDLPKGLLPAHLKSVTV
RQVVEAVRQHNLAQLHVEPVFVALRGSFHGKLVNTVQLTYGKQYRQPFARFGLNVEFIDP
QQPHQLQELPARHTRHWLTLQWSGEQLLVGRQAFSAITAVLLEPIQGEGGIIEFAADFYL
ALRRLCNEQQCPLIVDEVQSGFGRTGTFLASSHFNLQGDYYCLSKALGGGLMKIAATVIR
SSHYENDFSYIHSSTFAEDDASCHIALSALNRLFADDNAMLKDVHNKGEYLKTSLLELKA
AYPDVIADVRGRGLLLGFELHDQSGNSSLVQASAQYNDALGYLIAGYLLQFEALRVAPSG
SNSNVIRLEPPACITFAEIDGLISALQKVFDMLRRGDAFALAATICADSIPVVPVRDDSF
QVCADEIKADQGSRVVARVAFINHLIDADILGDVDPSLGQLSTEQKSAFMKRTAPERRAA
PIGPVLIRSRLGTAVEFTLYPLCMDSNAMADYIVSGDLDVIREEVGNRILDARADGYSVA
GLGMYTSIVTNNCQALKIPDMALTSGNALTIGMGLEAIEQGCKQQRLELHEQTAAVVGAS
GNVASTYASMLSATVDHLILIGSGRDGSVRRLEKTAQLIYADAARSILEGNAEQDRLAMR
LLKLDGIETLLKDHGSSPDLGLRVSRLVQEHVGVNAFITVTNDLEALKRARIVLCAANAA
QPFLDAGHFAENSVICDIAVPLNVDQALCSQRADVLYMHGGIVQTPLGDGLAPNVRAYLK
QGQLYACMAESVLMGLSGMKQHYSYGDISREQVQQIRALAAIHGFGLAQFKTNNSL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory