PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4600 (751 amino acids)

SeqID: Pf1N1B4_4600 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131943: biodegradative arginine decarboxylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4600
MYKDLKFPVLIVHRDIKADTVAGDRVRGIARELEQEGFSIVSAVDYNEGRLVASTHHGLS
CMLIAAEDASTHAHLLHNMAELIRLARVRAPDLPIFALGEQVTLENAPADAMAELNQLRG
ILYLFEDTVPFLARQVARAARKYLDGLLPPFFKALVQHTADSNYSWHTPGHGGGVAYHKS
PVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS
TANKIVWHSMVARDDLVLVDRNCHKSVLHSIIMTGAIPLYLCPERNELGIIGPIPLSEFS
RESIQAKIDASPLTKGREPKVKLAVVTNSTYDGLCYNAELIKQSLGNSVEVLHFDEAWYA
YAAFHEFFAGRYGMGTSRSEDSPLVFTTHSTHKLLAAFSQASMIHVQDGGARQLDRDRFN
EAFMMHISTSPQYSIIASLDVASAMMEGPAGRSLLQEMFDEALSFRRALANLRQHIAADD
WWFSIWQPPSAEGIEQVVTEDWLLQPDADWHGFGGVTDDYVLLDPIKVTLVMPGLTAGGA
LSARGIPAAVVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDAN
VSLATCLPCVAQHNVARYQGMGLRDLCDQLHACYRSNATAKHLKRMYTVLPEVAMKPADA
YDQLVRGEVEAVSIDALDGRIAAVMLVPYPPGIPLIMPGERFTESTRSIIDYLKFARTFD
SSFPGFVADVHGLQHEDEGNGRHYTVDCIKE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory