PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4677 (1113 amino acids)

SeqID: Pf1N1B4_4677 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129007: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4677
MAKKPRSATFIKDPLWYKDAVIYQVHVKSFFDSNNDGIGDFPGLIAKLDYISDLGVNTIW
LLPFYPSPRRDDGYDIAEYRGVHPDYGTMADAKRFIAEAHKRGLRVITELVINHTSDQHA
WFQRARKAKPGSAARDFYVWSDNDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQ
PDLNFDNPQVMKAVLSVMRYWLDMGIDGLRLDAIPYLIERDGTNNENLPETHDVLKQIRA
EIDANYPDRMLLAEANQWPEDTQLYFGNTDASGQKGDECHMAFHFPLMPRMYMALAQEDR
FPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAADRRARINLGIRR
RLAPLMERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRN
GGFSRADPASLVLPPIMDPLYGYLSVNVETQAGDPHSLLNWNRRLLAVRKQSKAFGRGTL
KMLSPSNRRILAYTREFTGPDGKHEIILCVANVSRSAQAAELDLSAYVGMVPVEMLGGNA
FPPIGQLNFLLTLAPYGFYWFGLAAENQMPSWHVEPAQSLPDFTTLVLKKRMEELLEAPS
RHTLEQGILPSWLQNRRWYAGKDGVIDSVNLAYGVRFGDPQHPVLLGEIDVTSGGQTSRY
QLPFGFISEEQVGAALPQQLALARVRRGRQVGLITDAFSLDSFVHAVLQSMQAGMVLPSD
GGEIRFEPADELTRLGLTAESEVRYLSAEQSNSSVVIGSSLVLKLIRKVAPGVHPELEMS
AYLTHAGFQNISPLLGAVIRRNAAGEDTLLMIAQGYLSNQGDAWEWTQNNLERALRDELA
DAVSEQEQHYNALGELKDFAGMLGQRLGEMHRVLAAPSANPDFAPQITTQKDALASAKDV
AAQLEHALKLLKQHQTELNAADQALVSRLLDNKKAILSHVQELGKKAAGGLRIRVHGDLH
LGQVLVIKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMTINVHNVDNT
VEAQAARQRVADRYLKEARQAFVDAYRLAAASLAHAWQDPEGEDAALALFGLEKAAYEVA
YEAENRPTWLPVPLHGLYGLLSGLKPFSDLGGE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory