PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4785 (253 amino acids)

SeqID: Pf1N1B4_4785 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1730535: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4785
MQIENKVFLVTGGASGLGAATAEMLVAAGAKVMLVDMNAEAVAAQAARLGAQSVVADISN
EAAAQAAVQATVKAFGGLNGLVNCAGIVRGEKILGKNGPHALDSFSQVINVNLIGSFNML
RLAATAIAETEADEDGERGVIINTASAAAFDGQIGQAAYSASKGAIVSLTLPAARELARF
GIRVMTIAPGIFETPMMAGMTPEVRESLAAGVPFPPRLGKASEYAALVRHIIENSMLNGE
VIRLDGALRMAAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory