PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4791 (259 amino acids)

SeqID: Pf1N1B4_4791 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15598119: periplasmic histidine-binding protein HisJ[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4791
MNIKWLTLPALALLCCSTGASAKEWKELRFGVNPSYPPFESTTADGGVQGFGVDLGNAIC
AELKLKCVWVSNDFDGLIPALKAGKFDAIESSMTVTDARKKQIDFTDRLYAGPTAIVTRK
DSGLLPTAESLRGKTIGYMQGTIQETYAKAKLGPGGVKLRAYQNQDQVYADLVFGRLDAS
IQDKLQAQMSFLTSPQGADFQNSEGISDPLVPSEIAIGIRKDNEELKGMLNAAIKALHEK
GIYAQIQQKHFGDLDLYNN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory